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Collection CM2C

CM2C1406

Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Chitinophaga sp.

Our Services

Requisition of Bacterial and Fungi Strains

Requisition of Bacterial and Fungi Strains that are available in CM2C catalog. For more information, please send an email to: cm2c@ciimar.up.pt.

Deposit of Bacterial or Fungi Strains

Deposit of bacterial or fungi strains in the CM2C culture collection. For more information, please send an email to: cm2c@ciimar.up.pt.

Isolation of Bacteria and Fungi

Isolation of bacteria or fungi from several environmental matrices, using general or optimized protocols for the isolation of specific microorganisms. For more information, please send an email to: cm2c@ciimar.up.pt.

Taxonomic identification of axenic bacterial or fungi strains.

This service includes DNA extraction, DNA amplification and Sanger Sequencing. It can also include sequence analysis for the identification of the taxonomy of the microorganism. For more information, please send an email to: cm2c@ciimar.up.pt.

Cryopreservation of Bacteria and Fungi

Cryopreservation of axenic cultures using Microbank™ system, allowing long-term microbial storage and recovery. This service can be complemented with the isolation and taxonomic identification of microorganisms. For more information, please send an email to: cm2c@ciimar.up.pt.

Identity
AphiaID

Not available

Strain Name

Not available

Other Code(s)

Not available

Domain

Bacteria

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Species

sp.

Origin
Isolation Date

Not available

Environmental Matrix

Rhizosediments

Habitat Type

Not available

Environment

Not available

Sample Description

Sediments in contact with the plant roots from P. australis and J. maritimus

Location

Lima River Estuary

Country

Portugal

Nagoya Protocol/ABS Status

Yes

Sampling Tool/Gear

Not available

Depth (m)

Not available

Sample Coordinates (Lat/Long)

41.691333 / -8.816639

Molecular Information
GenBank Accession Number(s)

KY794778

Genome

Not available

Physiological & Preservation Conditions
Temperature ºC

28

Isolation Medium

PCA

Growth Medium

PCA

Cryoprotectant

Glycerol 30%/ Microbank®

Preservation Type

Cryopreservation

Biobank Operator(s)
Sample Collected by

Filipa Santos

Isolated by

Filipa Santos

Identified by

Filipa Santos

References
Associated Publications

Santos, F., Mucha, A. P., Alexandrino, D. A., Almeida, C. M. R., & Carvalho, M. F. (2019). Biodegradation of enrofloxacin by microbial consortia obtained from rhizosediments of two estuarine plants. Journal of environmental management, 231, 1145-1153. doi.org/10.1016/j.jenvman.2018.11.022

Additional Resources

Not available

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